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jonescompneurolab / hnn-core

Simulation and optimization of neural circuits for MEG/EEG source estimates
https://jonescompneurolab.github.io/hnn-core/
BSD 3-Clause "New" or "Revised" License
52 stars 51 forks source link

add panel for MNE in new GUI #325

Open jasmainak opened 3 years ago

jasmainak commented 3 years ago

This is something to consider once we have the new GUI in place. You can potentially have a panel for loading in STC files and allowing the user to click on vertices so it shows the dipole waveform on the HNN waveform. This is totally doable and was part of the original HNN grant/vision

jasmainak commented 2 years ago

alright folks, here is a very quick minimal demo:

https://gist.github.com/jasmainak/865c56aae4e172d40b3336ae7e091cc1

screenshot:

image

thanks @alexrockhill for the help

give it a try. It should work on hnn-core master with the 3D viz dependencies of MNE: pyvista, pyvistaqt, ipyvtklink, and ipympl.

NOTE: the brain plot is interactive! You can rotate it :)

jasmainak commented 2 years ago

You can't click on vertices yet but I'm sure it's doable :)

jasmainak commented 2 years ago

picking also works, yayyy!

rythorpe commented 2 years ago

You can't click on vertices yet but I'm sure it's doable :)

Clicking on vertices works for me! This is super cool.