Closed jasmainak closed 1 year ago
Made some edits/proposals. Perhaps need to prioritise... ;)
I'd be interested in taking up the calcium dynamics. I am already laying the groundwork with #348 which is nearing completion (just need to take an afternoon and play with the simulations).
I have also made a lot of progress on what is likely the most difficult task remaining for the connectivity API #367.
The remaining stuff for more verbose warnings when adding connections might be a good exercise for @kenloi as a more intermediate level PR. This would involve creating a list of what is considered "valid connections" (example, pyramidal cells shouldn't make GABA synapses), and referencing that list from net.add_connection
.
@rythorpe any issues that are close to your heart and/or you'd want to tackle? we're thinking of an august release
Something that's been on my mind for awhile, do you guys thinks it'd be possible to add a sentence or two to the main hnn-core page? At the moment it is extremely cryptic and requires you to go the HNN-GUI repo to figure out that this is a simulator for a neocortical column.
Perhaps
This is a leaner and cleaner version of the code based off the HNN repository, a user friendly tool for the biophysical simulation of a neocortical column. However, a Graphical User Interface is not supported at the moment in this repository.
I can open a PR if you guys agree. Perhaps later it'd also be great to have a picture of the model there as well to make it immediately clear what this repo is for.
yes, that's fine! PR is welcome :)
okay, I checked some boxes and reordered the issues so it's clearer to what's done and what's left. Expanded the connectivity checklist so it's clear to see what needs to be done there. This issue has also been pinned so it's on top of the priority list.
hi guys,
I think it's time for another release. 3 month cycles are usually recommended but 6 months is also fine. I'd like to get it out before getting busy with next grant cycle. I'm thinking that these are the goals for this release:
Priorities
L
to match points. But also make sure ourL
andsec_pts
agree! @cjaybpostproc=False
as default insimulate_dipole
@cjaybConnectivity API
.drop(probability, src_gids, target_gids)
.plot
net.connectivity
list:conns = pick_connecitivity(conns, src=‘L2_pyramidal')
plot_connectivity(net, conn)
_Connectivity
a proper class with public and private attributes~Bump to 0.3
anything else? It's going to be a bombshell of a release!