[MRG] Update legacy json and param conversion function for new json format

jonescompneurolab / hnn-core

Simulation and optimization of neural circuits for MEG/EEG source estimates

https://jonescompneurolab.github.io/hnn-core/

BSD 3-Clause "New" or "Revised" License

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Closed gtdang closed 3 months ago

gtdang commented 4 months ago

This changes the convert_to_hdf5 function to convert_to_json.

The function converts legacy flat json and param files to the new hierarchical json format.
It also adds network connectivity. By default it uses the Jones 2009 model for the connectivity but supports the other pre-defined network models. No network connectivity can be added by supplying None.

Question:

Should the default be None instead of the Jones 2009 for adding network connectivity?

jasmainak commented 3 months ago

Do these new json format files work with the GUI?

gtdang commented 3 months ago

Do these new json format files work with the GUI?

No, not yet. I've been working on it but got side tracked with the CI issues. Should be able to refocus on it next week.