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jooolia / R_cytoscape_tutorial

Tutorial on using R to run cytoscape visualizations
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Sift through collected links #1

Open jooolia opened 9 years ago

jooolia commented 9 years ago

Lots of old, out of date material on the web related to running cytoscape with python or R. Need to determine what material, apis, etc actually work with Cytoscape 3.

jooolia commented 9 years ago

Github repo: https://github.com/idekerlab/cy-rest-R Tutorial from VIZBI 2015: https://github.com/idekerlab/cyREST/wiki/VIZBI-2015-Tutorial (in python, but perhaps could be adapted) Slides: http://www.slideshare.net/keiono/vizbi-2015-tutorial-cytoscape-ipython-docker-and-reproducible-network-data-visualization-workflows Cyrest app: http://apps.cytoscape.org/apps/cyrest Cyrest demo Ipython notebook: http://nbviewer.ipython.org/gist/keiono/bd6ee462b5d5c152eb02

jooolia commented 9 years ago

From talk at San Diego Systems Biology: http://www.slideshare.net/keiono/sdcsb-cytoscape-advanced-tutorial https://github.com/idekerlab/sdcsb-advanced-tutorial

jooolia commented 9 years ago

Older clickey Cytoscape tut from Fuhrman lab student: https://stamps.mbl.edu/index.php/Cytoscape_Tutorial_%28in_progress%29