Open jooolia opened 9 years ago
Github repo: https://github.com/idekerlab/cy-rest-R Tutorial from VIZBI 2015: https://github.com/idekerlab/cyREST/wiki/VIZBI-2015-Tutorial (in python, but perhaps could be adapted) Slides: http://www.slideshare.net/keiono/vizbi-2015-tutorial-cytoscape-ipython-docker-and-reproducible-network-data-visualization-workflows Cyrest app: http://apps.cytoscape.org/apps/cyrest Cyrest demo Ipython notebook: http://nbviewer.ipython.org/gist/keiono/bd6ee462b5d5c152eb02
From talk at San Diego Systems Biology: http://www.slideshare.net/keiono/sdcsb-cytoscape-advanced-tutorial https://github.com/idekerlab/sdcsb-advanced-tutorial
Older clickey Cytoscape tut from Fuhrman lab student: https://stamps.mbl.edu/index.php/Cytoscape_Tutorial_%28in_progress%29
Lots of old, out of date material on the web related to running cytoscape with python or R. Need to determine what material, apis, etc actually work with Cytoscape 3.