Error installing mirtarbase in Rstudio

[Mannyari]

Hi,

I am trying to install mirtarbase with:

"install.packages("remotes") remotes::install_github("jotsetung/mirtarbase")"

but got the following error:

"Downloading GitHub repo jotsetung/mirhostgenes@HEAD Skipping 29 packages ahead of CRAN: BiocGenerics, zlibbioc, GenomeInfoDbData, GenomeInfoDb, XVector, IRanges, S4Vectors, Biostrings, KEGGREST, Biobase, BiocFileCache, AnnotationDbi, SparseArray, DelayedArray, S4Arrays, MatrixGenerics, Rhtslib, BiocParallel, SummarizedExperiment, BiocIO, GenomicAlignments, Rsamtools, GenomicRanges, biomaRt, rtracklayer, ProtGenerics, AnnotationFilter, GenomicFeatures, ensembldb ── R CMD build ──────────────────────────────────────────────────────────────────────────────────────────────────────────────── ✔ checking for file ‘/private/var/folders/n8/40r86z7d5jz295b_7kqf9hvw0000gn/T/RtmpqLrhyh/remotes94fe62d36c25/jorainer-mirhostgenes-5e15257/DESCRIPTION’ (701ms) ─ preparing ‘mirhostgenes’: (956ms) ✔ checking DESCRIPTION meta-information ─ checking for LF line-endings in source and make files and shell scripts (542ms) ─ checking for empty or unneeded directories ─ building ‘mirhostgenes_0.99.10.tar.gz’

• installing source package ‘mirhostgenes’ ... using staged installation R inst byte-compile and prepare package for lazy loading Error in reconcilePropertiesAndPrototype(name, slots, prototype, superClasses, : The prototype for class "PreMirnaIdFilter" has undefined slot(s): '.valueIsCharacter' Error: unable to load R code in package 'mirhostgenes' Execution halted ERROR: lazy loading failed for package ‘mirhostgenes’
• removing ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/mirhostgenes’ Warning message: In i.p(...) : installation of package '/var/folders/n8/40r86z7d5jz295b_7kqf9hvw0000gn/T//RtmpqLrhyh/file94fe266123d3/mirhostgenes_0.99.10.tar.gz' had non-zero exit status".

So I tried

"install.packages("remotes") remotes::install_github("jotsetung/mirhostgenes")"

but got the following error:

"Downloading GitHub repo jotsetung/mirhostgenes@HEAD Skipping 29 packages ahead of CRAN: BiocGenerics, zlibbioc, GenomeInfoDbData, GenomeInfoDb, XVector, IRanges, S4Vectors, Biostrings, KEGGREST, Biobase, BiocFileCache, AnnotationDbi, SparseArray, DelayedArray, S4Arrays, MatrixGenerics, Rhtslib, BiocParallel, SummarizedExperiment, BiocIO, GenomicAlignments, Rsamtools, GenomicRanges, biomaRt, rtracklayer, ProtGenerics, AnnotationFilter, GenomicFeatures, ensembldb ── R CMD build ──────────────────────────────────────────────────────────────────────────────────────────────────────────────── ✔ checking for file ‘/private/var/folders/n8/40r86z7d5jz295b_7kqf9hvw0000gn/T/RtmpMprh3F/remotes98aa199e28c8/jorainer-mirhostgenes-5e15257/DESCRIPTION’ (667ms) ─ preparing ‘mirhostgenes’: (982ms) ✔ checking DESCRIPTION meta-information ─ checking for LF line-endings in source and make files and shell scripts (556ms) ─ checking for empty or unneeded directories ─ building ‘mirhostgenes_0.99.10.tar.gz’

• installing source package ‘mirhostgenes’ ... using staged installation R inst byte-compile and prepare package for lazy loading Error in reconcilePropertiesAndPrototype(name, slots, prototype, superClasses, : The prototype for class "PreMirnaIdFilter" has undefined slot(s): '.valueIsCharacter' Error: unable to load R code in package 'mirhostgenes' Execution halted ERROR: lazy loading failed for package ‘mirhostgenes’
• removing ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/mirhostgenes’ Warning messages: 1: Not a validObject(): no slot of name "manuallyCuratedGeneMotifAssociationTable" for this object of class "MotifList" 2: Not a validObject(): no slot of name "manuallyCuratedGeneMotifAssociationTable" for this object of class "MotifList" 3: In i.p(...) : installation of package '/var/folders/n8/40r86z7d5jz295b_7kqf9hvw0000gn/T//RtmpMprh3F/file98aadb05999/mirhostgenes_0.99.10.tar.gz' had non-zero exit status".

My Rstudio version is 2024.04.2+764 (2024.04.2+764), and my R version is 4.4.1. All packages are up to date.

Can you advise?

Many thanks, Arianna

[jorainer]

Dear Arianna @Mannyari - I'm afraid this package can no longer be installed on more recent R versions. I stopped development and maintenance very long time ago. Sorry for that.

[Mannyari]

Hi,

Don't worry and thanks a lot for your reply.

Best wishes, Arianna

Il giorno mer 21 ago 2024 alle ore 11:26 Johannes Rainer < @.***> ha scritto:

Dear Arianna @Mannyari https://github.com/Mannyari - I'm afraid this package can no longer be installed on more recent R versions. I stopped development and maintenance very long time ago. Sorry for that.

— Reply to this email directly, view it on GitHub https://github.com/jorainer/mirtarbase/issues/1#issuecomment-2301587200, or unsubscribe https://github.com/notifications/unsubscribe-auth/BEP5T2PUHI7F2VJK6T2U5W3ZSRMN5AVCNFSM6AAAAABM2F4VTKVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDGMBRGU4DOMRQGA . You are receiving this because you were mentioned.Message ID: @.***>