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jordenrabasco / Long_read_processing_tutorial

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Descripting sample data #2

Open jordenrabasco opened 2 years ago

jordenrabasco commented 2 years ago

Here I talk about the sequencing data used in the tutorial. I guess is this an okay way to do this?

https://github.com/jordenrabasco/Long_read_processing_tutorial/blob/59cd38e50e19a140fe7e0495169adfac17cc346d/long%20read%20Tutorial.Rmd#L36-L40

benjjneb commented 2 years ago

such as loop seq

Have to include circular consensus sequencing (also known as HiFi) here, as that is the data we are including. LoopSeq is worth mentioning too, but both CCS/HiFi and LoopSeq are using "coverage" to defeat sequencing error in a comparable way.

benjjneb commented 2 years ago

pacbio sequencing of a zymo mock community

Include a link to the exact material used here.

of nine human fecal samples, from 3 different subjects

Add something about the sampling being longitudinal, rather than these being replicate measurements of the same samples.

jordenrabasco commented 2 years ago

updated