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jorgensd / dolfinx-tutorial

A reimplementation of the Springer book: https://github.com/hplgit/fenics-tutorial/, covering new topics as well as transitioning from dolfin to dolfinx
https://jorgensd.github.io/dolfinx-tutorial/
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Docker image Error displaying widget: model not found #84

Closed TeaCult closed 2 years ago

TeaCult commented 2 years ago

First time using docker and first time trying fenics. I have followed instructions on ubuntu 22.04 and then installed on docker host :

It didn't worked out of box I installed these on the host: Then I ve got topology cell_types and geometry. Basic functionality seems to be working. 

    pip3 install vtk
    pip3 install pythreejs
    pip3 install ipympl

Everythings works fine except pyvista drawing.

Both first time on fenics and docker.

Tried to adjust versions in jupyter extension list I adjusted some version it asked me to intall npm and node js installed it with 

! apt-get install -y npm  # in docker images jupyter lab. Then it wanted me to rebuild lab 
! jupyter lab rebuild

then it started to complaining abotu pythreejs although it is installed ...

I am now installing latest version of all of extensions ... and rebuilding the lab. functionality is ok but display is no go. I wonder what if I use something like open3D to display it. I used it with google colab before.

Do you have any suggestion ? I was trying first tutorial in online docs of fenicsx.

Thank you.

jorgensd commented 2 years ago

There is currently an issue with pyvista and python3.10/VTK compatibility, see: https://github.com/pyvista/pyvista/pull/2912

For now, i would suggest using the docker image: dokken92/dolfinx_custom:16062022 as explained in https://jorgensd.github.io/dolfinx-tutorial/fem.html#tutorial-compatible-docker-images

TeaCult commented 2 years ago

Thank you very much. I missed this tutorial compatible image section.