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jorvis / GALES

Genomic Annotation Logic and Execution System
MIT License
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Docker Nerver Run #17

Closed jianlanren closed 5 years ago

jianlanren commented 5 years ago

Docker.app installed for sure and was shown running. However, I can't run it using command in the terminal.

Screen Shot 2019-04-23 at 11 30 28 PM
jorvis commented 5 years ago

What happens when you try to run the test docker image?

docker run hello-world

jianlanren commented 5 years ago

Hi Dr.Orvis,

So before I log into the bfx.app.jhu.edu account, docker works. After logging in, it won't work. I am not sure where I did wrong. Like this: [image: Screen Shot 2019-04-24 at 1.34.07 PM.png]

On Wed, Apr 24, 2019 at 1:20 PM Joshua Orvis notifications@github.com wrote:

What happens when you try to run the test docker image?

docker run hello-world

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/jorvis/GALES/issues/17#issuecomment-486368656, or mute the thread https://github.com/notifications/unsubscribe-auth/ALZJK4PL3SMU62H6RPIJQF3PSCQGBANCNFSM4HIAIX7Q .

-- Jianlan Ren Formulation Specialist Integrated DNA Technology

jorvis commented 5 years ago

I see. The point of this particular task is to run GALES from start to finish on your own machine. Do not use the JHU server at all.

jianlanren commented 5 years ago

Okay, now I understand. But I tried the first command "sudo apt-get install docker.io python3 python3-pip" it says command not found.

LittleMikes-MacBook-Pro:~ jianlan$ sudo apt-get install docker.io python3 python3-pip

sudo: apt-get: command not found

On Wed, Apr 24, 2019 at 1:38 PM Joshua Orvis notifications@github.com wrote:

I see. The point of this particular task is to run GALES from start to finish on your own machine. Do not use the JHU server at all.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/jorvis/GALES/issues/17#issuecomment-486375269, or mute the thread https://github.com/notifications/unsubscribe-auth/ALZJK4N57TC7BVYBUYAGBL3PSCSIRANCNFSM4HIAIX7Q .

-- Jianlan Ren Formulation Specialist Integrated DNA Technology

jorvis commented 5 years ago

Those 'apt-get' commands are for Linux/Debian-based systems. I can see from here that you're using OS X, so you'll have to seek out instructions for your system there. Example:

https://docs.docker.com/docker-for-mac/install/index.html

jianlanren commented 5 years ago

Thank you Dr.Orvis. The instruction helps a lot.

On Wed, Apr 24, 2019 at 1:59 PM Joshua Orvis notifications@github.com wrote:

Those 'apt-get' commands are for Linux/Debian-based systems. I can see from here that you're using OS X, so you'll have to seek out instructions for your system there. Example:

https://docs.docker.com/docker-for-mac/install/index.html

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/jorvis/GALES/issues/17#issuecomment-486383118, or mute the thread https://github.com/notifications/unsubscribe-auth/ALZJK4KWHW3POP54JCEAT5TPSCU2ZANCNFSM4HIAIX7Q .

-- Jianlan Ren Formulation Specialist Integrated DNA Technology