Image platform specific to amd64

[jeffreykstone]

I have an apple silicon Mac and so am getting the following:

WARNING: The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested

[jorvis]

Just a warning. Does it run through completion anyway? Others reported yes.

[jeffreykstone]

Not for me for whatever reason. I left specific comments when I submitted what did come through.

On Apr 23, 2023, at 7:28 PM, Joshua Orvis @.***> wrote:

Just a warning. Does it run through completion anyway? Others reported yes.

— Reply to this email directly, view it on GitHub https://github.com/jorvis/GALES/issues/34#issuecomment-1519294522, or unsubscribe https://github.com/notifications/unsubscribe-auth/AEVSEYZCSKPAPBD2UWCDED3XCXQNZANCNFSM6AAAAAAXI4RDBQ. You are receiving this because you authored the thread.

[Meganmli]

After running ./run_prok_pipeline -i ../test_data/genomes/E_coli_k12_dh10b.fna -od /tmp/demo -v cheetah -rd dbs I get this same error message and my terminal seems to hang indefinitely.

WARNING: The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested terminate called after throwing an instance of 'std::__ios_failure' what(): basic_filebuf::underflow error reading the file: iostream error

[jorvis]

What do you see in another terminal if you run 'top' or anything to watch your system resources? Are the computes still running?

[Meganmli]

@jorvis I see kernel_task, WindowServer, JavaApplicat, and top running

[Meganmli]

Update: running the previous command as seen below with full paths successfully comleted! ./run_prok_pipeline -i {full/path/to}/test_data/genomes/E_coli_k12_dh10b.fna -od /tmp/demo -v cheetah -rd {full/path/to}/dbs -t 3

Can resolve this issue

[jorvis]

Confirmed, the rest are just warnings.