jorvis / biocode

Bioinformatics code libraries and scripts
MIT License
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GFF3 validator #17

Open ktretina opened 10 years ago

ktretina commented 10 years ago

We have talked before about writing a script to confirm full gff3 format agreement, and I have found someone else's attempt at doing this (link below). This might be a good reference if we plan on writing such a script ourselves.

http://modencode.oicr.on.ca/validate_gff3_online/validate_gff3.html

jorvis commented 10 years ago

Thanks for submitting this. You're right, that implementation's documentation is a good starting point, though it allows a lot of room for expansion. It doesn't check anything about encoding conventions for different feature types that the GFF3 specification describes, for example, such as for matches or gene models.