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jorvis / biocode

Bioinformatics code libraries and scripts
MIT License
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Exclude mRNA features in bacterial TBL exports #56

Open jorvis opened 6 years ago

jorvis commented 6 years ago

From Suvvi:

Just a reminder that mRNA feature needs to be avoided in tbl while converting gff or genbank file into tbl file.

The genome that I submitted with mRNA feature has been sent back as it had mRNA… pasting the error here (just FYI),

“FATAL: DISC_BACTERIA_SHOULD_NOT_HAVE_MRNA:5 bacterial sequences have mRNA features

FATAL: DiscRep_ALL:DISC_BACTERIA_SHOULD_NOT_HAVE_MRNA::5 bacterial sequences have mRNA features

/tmp/tmp.zCDmHD4k9r:tig00000001_edited (length 4883137) /tmp/tmp.zCDmHD4k9r:tig00000064_edited (length 1234209) /tmp/tmp.zCDmHD4k9r:tig00000082_edited (length 415988) /tmp/tmp.zCDmHD4k9r:tig00000065_edited (length 771583) /tmp/tmp.zCDmHD4k9r:tig00000066_edited (length 630306)”