search

josedolz / LiviaNET

This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
MIT License
161 stars 52 forks source link

Error occured while training #25

Open amruta24 opened 5 years ago

amruta24 commented 5 years ago

Screenshot from 2019-04-15 14-29-41

josedolz commented 5 years ago

Hi, can you be more precise so that I can understand better the error? Did you just clone the repository and run the code? Or did you modify something? Which version of Theano/python/etc are you using? Without more information is hard to have any insight of that problem.

Jose

amruta24 commented 5 years ago

hi , yes , I just clone the repository and run the code . I used the python 2.7 and Theano 1.0.3 versions for execution but these error are occured.

josedolz commented 5 years ago

Hi, Can you try in another machine? We have tried to reproduce the error in different machines and environments and it doesn’t appear.

Jose

amruta24 commented 5 years ago

Hi , I tried to run on 3 different machines but got same error . Otherthan dataset paths their is anything to change in config file? It is OK to use Theano 1.0.4 or there is need to use any other versions?

amruta24 commented 5 years ago

image The above error occure while debug

amruta24 commented 5 years ago

image

these error are occure while training. i will try with different theano version but still these error are occured . can you please explain in detaile how to set up and train the module ?

josedolz commented 5 years ago

Hi, for the last error we have seen it in several computers. The workaround for it is to run the code with some Theano flags, like this:

THEANO_FLAGS='floatX=float32' python ./networkTraining.py ./LiviaNET_Config.ini 0
QingchenFan commented 5 years ago

Hi！How to use the data in Dataset?

QingchenFan commented 5 years ago

HI! Can Dataset folder data directly into the program to use?

josedolz commented 5 years ago

Hi @QingchenF Can you reformulate your questions please? I do not get your points.

QingchenFan commented 5 years ago

image I don't know why the program stopped working

josedolz commented 5 years ago

Hi @QingchenF The data I put in the repository is just to be sure that the network can run. The only thing you have to do is to change the absolute path of those folders to the path in your computer. With that change it should run. Regarding your second problem, without more information I cannot see what the problem is.

Best

QingchenFan commented 5 years ago

Thank you very much