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joshwlambert
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DAISIEmainland
Simulate phylogenetic data on islands with a evolving mainland pool
https://joshwlambert.github.io/DAISIEmainland/
GNU General Public License v3.0
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Package update for Habrok HPC
#81
joshwlambert
closed
1 year ago
0
Test PR to check which changes need to merged into main for Habrok
#80
joshwlambert
closed
1 year ago
0
Package maintenance
#79
joshwlambert
closed
1 year ago
1
Change label, fix #77
#78
richelbilderbeek
closed
2 years ago
2
Island plot legend
#77
richelbilderbeek
closed
2 years ago
1
Load the library secretly to omit explicit namespace usage
#76
richelbilderbeek
closed
2 years ago
1
Changes to bookdown
#75
Neves-P
closed
2 years ago
1
Numerical integrator use
#74
Neves-P
closed
2 years ago
1
Recolonisations are plotted prettily as well
#73
richelbilderbeek
closed
2 years ago
1
No branching for colonist that underwent anagenesis?
#72
richelbilderbeek
closed
2 years ago
2
Vertical lines are at correct time
#71
richelbilderbeek
closed
2 years ago
1
Plot branches connected correctly by `plot_daisie_data`
#70
richelbilderbeek
closed
2 years ago
5
Issue #68: plot recolonisations
#69
richelbilderbeek
closed
2 years ago
1
Plot all recolonisations in 'plot_daisie_mainland_data'
#68
richelbilderbeek
closed
2 years ago
23
Use 'Time before present' in 'plot_mainland', fix #63
#67
richelbilderbeek
closed
2 years ago
1
Joss
#66
joshwlambert
closed
2 years ago
1
Use correct X axis
#65
richelbilderbeek
closed
2 years ago
2
plot_daisie_mainland_data: reverse time axis
#64
richelbilderbeek
closed
2 years ago
5
Changing `plot_mainland` x-axis to time before present
#63
joshwlambert
closed
2 years ago
8
Use time before present + plot recolonisations
#62
joshwlambert
closed
2 years ago
7
Color clades based on stac_str
#61
richelbilderbeek
closed
2 years ago
1
Add plotting
#60
richelbilderbeek
closed
2 years ago
1
Add `plot_daisie_mainland_data`
#59
richelbilderbeek
closed
2 years ago
4
add tidyverse style check to tests
#58
joshwlambert
closed
2 years ago
1
Reconclude some scenarios
#57
joshwlambert
closed
2 years ago
0
Resurrect island_to_tables and daisie_data_to_tables for V2?
#56
joshwlambert
closed
2 years ago
3
Write function to create `ideal_island_tbl` and `emperical_island_tbl` from `island_tbl`
#55
richelbilderbeek
closed
2 years ago
6
add labels argument to plots
#54
joshwlambert
closed
2 years ago
0
Check whether island_to_table, ideal_island_to_table and empirical_island_to_table can be deleted
#53
joshwlambert
closed
2 years ago
0
fix the build on fix_check branch
#52
joshwlambert
closed
2 years ago
1
Finish plot_island_tbl on tree_plots branch
#51
richelbilderbeek
closed
2 years ago
7
change plotting functions to use results and not read the results in the plotting function
#50
joshwlambert
closed
2 years ago
0
Write read_results function
#49
joshwlambert
closed
2 years ago
0
Remove link to Tidyverse coding standard?
#48
richelbilderbeek
closed
2 years ago
1
Better document `island_replicates`, remove `sim_island_and_mainland`
#47
richelbilderbeek
closed
2 years ago
1
Suggest: uniform 'island_replicates' datatype
#46
richelbilderbeek
closed
2 years ago
0
Clean up within-function checks when done
#45
richelbilderbeek
closed
2 years ago
2
Delete sim_island_and_mainland in future
#44
joshwlambert
closed
2 years ago
1
Param plots
#43
joshwlambert
closed
2 years ago
0
Create `plot_daisie_data`
#42
richelbilderbeek
closed
2 years ago
11
Fix `plot_mainland`
#41
richelbilderbeek
closed
2 years ago
2
Create plot with phylogenies for mainland
#40
richelbilderbeek
closed
2 years ago
9
Restructure param plotting functions to make it more modular
#39
joshwlambert
closed
2 years ago
1
Write official DAISIE data standard documentation
#38
joshwlambert
closed
2 years ago
6
unify naming conventions for data structures
#37
joshwlambert
closed
2 years ago
0
Data types better checked and documented
#36
richelbilderbeek
closed
2 years ago
2
Revise current vignette to focus on parameter estimation using DAISIE
#35
joshwlambert
closed
2 years ago
0
Write vignette on island-mainland visualisation
#34
joshwlambert
closed
2 years ago
0
Suggest: try to get DAISIEmainland on rOpenSci
#33
richelbilderbeek
closed
2 years ago
1
Plot mainland and island
#32
richelbilderbeek
closed
2 years ago
1
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