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joshwlambert
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DAISIEprep
Extracts phylogenetic island community data from phylogenetic trees
https://joshwlambert.github.io/DAISIEprep
GNU General Public License v3.0
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Lots of updates for version release
#16
Closed
joshwlambert
closed
1 year ago
joshwlambert
commented
1 year ago
PR changes include:
Functions
added add_island_colonist()
added add_multi_missing_species()
added benchmark()
added count_missing_species()
bug fixes for various functions
added endemicity_to_sse_states(), get_sse_tip_states(), endemicity_to_sse_states(), sse_states_to_endemicity(), select_endemicity_status()
added extract_stem_age(), added extract_stem_age_asr(), added extract_stem_age_genus(), extract_stem_age_min()
updates to class methods
added plot_performance()
added plot_sensitivity()
added read_performance()
added read_sensitivity()
added sensitivity(), added performance()
added rm_island_colonist()
added rm_multi_missing_species()
added unique_island_genera()
added BioGeoBEARS helper functions
Vignettes
added sensitivity vignette
added extending_asr vignette
updated tutorial vignette
Package stuff
updated documentation
updated tests
updated workflows
updated author list
updated data stored in package
PR changes include: Functions
Vignettes
Package stuff