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josiahseaman
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FluentDNA
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
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Future: Just in time rendering
#45
josiahseaman
opened
6 years ago
1
Color Zooming - best of both worlds
#44
josiahseaman
opened
6 years ago
1
VCF file parser for RADseq
#43
josiahseaman
opened
6 years ago
0
Standalone DDV script that uses current python version
#42
josiahseaman
opened
6 years ago
0
Correct legend for protein sequences
#41
josiahseaman
closed
5 years ago
1
Include example data files and tests for users
#40
josiahseaman
closed
5 years ago
1
Bug: Nucleotide Number mouse over doesn't make sense in some contexts
#39
josiahseaman
closed
5 years ago
1
Pip installable refactor
#38
josiahseaman
closed
6 years ago
1
Quick mode should create a webpage and launch a browser for large files
#37
josiahseaman
opened
6 years ago
0
Allow user to set fixed width from command line
#36
josiahseaman
closed
6 years ago
0
Manage File Assets for Batch Processing of a Genome
#35
josiahseaman
opened
7 years ago
0
Multiple Reference Contigs in one Alignment Visualization
#34
josiahseaman
opened
7 years ago
0
Edit in Translocations
#33
josiahseaman
closed
6 years ago
1
Faster reverse complement
#32
josiahseaman
closed
7 years ago
0
Allow Contig breaks (headers) in Parallel View
#31
josiahseaman
closed
7 years ago
1
Compile for Linux
#30
josiahseaman
opened
7 years ago
0
Actual development merged to python-master
#29
josiahseaman
closed
7 years ago
0
Unique Sequence Visualization
#28
josiahseaman
closed
7 years ago
0
Annotation Layer ordering
#27
josiahseaman
closed
6 years ago
0
Toggleable annotation layers
#26
josiahseaman
closed
6 years ago
0
Listing of Available Annotation Overlays
#25
josiahseaman
closed
6 years ago
0
Summary Statistics
#24
BryanHurst
opened
8 years ago
0
Break alignment stats up into phases
#23
josiahseaman
opened
8 years ago
0
Standalone executable
#22
josiahseaman
opened
8 years ago
0
DDV annotation pop over
#21
josiahseaman
closed
6 years ago
0
Show only Exons in Gencode annotation
#20
josiahseaman
closed
6 years ago
0
SVG Display Demo in OpenSeaDragon
#19
josiahseaman
closed
6 years ago
1
Annotation display in DDV pages
#18
josiahseaman
opened
8 years ago
4
Double check accuracy of alignment
#17
josiahseaman
closed
8 years ago
1
Move all FASTA sources to output specific folder
#16
josiahseaman
closed
8 years ago
0
Read chromosome contig from whole genome files
#15
josiahseaman
closed
7 years ago
0
Use all Alignment information from Chain Files
#14
josiahseaman
closed
7 years ago
7
Generate Independent Visualization Pages from Python
#13
josiahseaman
closed
8 years ago
0
Generate FASTA from pairwise alignment "chain" files
#12
josiahseaman
closed
8 years ago
6
Parallel Genomes Layout
#11
josiahseaman
closed
8 years ago
5
Gallery Feature
#10
josiahseaman
opened
8 years ago
0
Reallly Large Images
#9
josiahseaman
closed
8 years ago
1
Text Labels for contigs
#8
josiahseaman
closed
8 years ago
2
Multi-part FASTA File display
#7
josiahseaman
closed
8 years ago
2
Switch download service to VERSION instead of GI
#6
josiahseaman
opened
8 years ago
0
Interface naming robustness
#5
josiahseaman
closed
6 years ago
0
Updated Mouse Tracking for Nucleotide Index
#4
josiahseaman
closed
8 years ago
0
Sharp lines on zoomed in pixels
#3
josiahseaman
closed
8 years ago
1
New Tiled Layout
#2
josiahseaman
closed
8 years ago
4
User Specified Column Width
#1
josiahseaman
closed
8 years ago
0
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