search

jpiper / pyDNase

Python module for the easy handling and analysis of DNase-seq data
http://jpiper.github.io/pyDNase
MIT License
37 stars 24 forks source link

Empty bed file after running wellington_footprints.py #43

Open hiroyukikato911 opened 5 years ago

hiroyukikato911 commented 5 years ago

Hi,

This might be same type of question as #29 or #37. I have ATAC seq data and whenever I run wellington on my data, I get "waiting on last 80 threads." as the last output. The process seems to finish immediately, yeilding empty WellingtonFootprints.FDR.0.01.bed file. I tried different FDR cutoff, but not seems working.

I installed pip install pyDNase=0.3.0

I'm running python 2.7

Any solution for this? Thank you so much in advance.

jpiper commented 5 years ago

I'm hoping #39 will have fixed this. I am working on a new release...

DimitrisGrig commented 5 years ago

problem insists