Doesn't work despite README folder structure

jprellberg / isbi2019cancer

3rd place submission for ISBI 2019 C-NMC challenge

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Doesn't work despite README folder structure #5

Open pk2005 opened 3 years ago

pk2005 commented 3 years ago

Thanks a lot for the code - I have read your README and have formatted the data as per it, however the trainingset is empty like in the previous questions from 2019 and 2020.

I believe something is different about the data naming or similar could be different and causing the parsing to fail.

Can you tell us what your original names of the files were? The post challenge data is in form data/fold_0/all/UID_1_1_1_all.bmp or data/fold_2/hem/UID_H1_1_1_hem.bmp for example.

Thanks!

jprellberg commented 3 years ago

Unfortunately, I do not have access to the data anymore but I believe to have written the README accurately portraying the data layout. You're just going to have to debug the get_dataset method in dataset.py and see what ends up in the dataframe.

pk2005 commented 3 years ago

thanks for the answer, trying to that now.