Closed sunjh22 closed 1 year ago
Hi @sunjh22
Thanks for the clear question and the data provided to test it. I have found out the problem: there is a small bug regarding the sample column type in the loadCNVcalls()
method.
I will fix it and publish a new version this week.
Thanks for your quick response and help! I will close this issue now.
Hi @jpuntomarcos ,
I came across some unexpected issues when using
CNVfilteR
. I loaded the cnv regions and vcf files as instructed, but at the last step, an error is throw out as the title of this issue. Following is the command ran in R: `> library(CNVfilteR)Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
The following objects are masked from 'package:base':
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
Attaching package: 'Biostrings'
The following object is masked from 'package:base':
The masked version of 'hg38' is not installed. Using the unmasked version. This means that no automatic masking will be available.
I attached some data for your testing, could you give some suggestions about this issue? Is it due to the uninstallation of masked version of 'hg38'?
Thank you in advance.
Jiahong Sun test.zip