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jpuritz / dDocent

a bash pipeline for RAD sequencing
ddocent.com
MIT License
52 stars 41 forks source link

bedtools version #15

Closed outpaddling closed 8 years ago

outpaddling commented 8 years ago

Is it really necessary to use bedtools 2.23.0, or should the latest version work as well?

I see the note about the latest vcftools lacking certain options, but couldn't find an explanation of why bedtools 2.23.0 should be required.

Thanks,

Jason
jpuritz commented 8 years ago

It is necessary. Bedtools changed the output of the coverage tool which is used for interval setting for dDocent. Most versions before 2.23.0 will work, but none after will.

outpaddling commented 8 years ago

OK, thanks much.