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jpuritz / dDocent

a bash pipeline for RAD sequencing
ddocent.com
MIT License
52 stars 41 forks source link

Add `--without-curses` samtools ./configure in the install script #25

Closed isaacovercast closed 7 years ago

isaacovercast commented 7 years ago

Install fails on any cluster compute node that doesn't have curses libraries (probably most of them). This is an easy fix by updating install_dDocent_requirements line 129 to read: ./configure --without-curses

I would make a PR but seems silly for such a small change

isaacovercast commented 7 years ago

Also the link to the cd-hit tgz is bad. The new one should be:

https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/cdhit/cd-hit-v4.6.1-2012-08-27.tgz

jpuritz commented 7 years ago

This is the first I've heard about the curses library problem, so I am not going to make that change at the moment. Most folks installing on a cluster should be able to handle that problem on their own. Thanks for pointing out the link error.