Closed TomaszSuchan closed 7 years ago
Hi Tomasz,
This has been on the todo list for a little while. It’s a simple update to dDocent, but also requires updating a tutorial and several other scripts. I’ve also tried to avoid, as much as possible, to keep changing version and installation requirements. I’d probably go ahead and add a version check with an if statement to provide the right command for the given version. If you want to take a stab at this, please feel free to do so and submit a pull request.
Thanks,
Jon
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On November 30, 2016 at 2:19:22 PM, Tomasz Suchan (notifications@github.com) wrote:
Hi Jon, did you consider updating vcftools commands, so dDocent could use new versions of vcftools? So far, I found these changes in vcftools flags to be made:
--geno to --max-missing --missing to --missing-indv
Am I missing something? I could make these changes if you want.
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Hi Jon, OK, I'll do this. I think the best way to deal with changing versions it is to keep the flag as a variable that changes the value according to the vcftools version. Cheers, Tomasz
Hi Jon, did you consider updating vcftools commands, so dDocent could use new versions of vcftools? So far, I found these changes in
vcftools
flags to be made:Am I missing something? I could make these changes if you want.