Closed TomaszSuchan closed 7 years ago
Thanks so much for this. I think your pull request only had one patch, but I pulled on your master dDocent branch to get all the changes.
Cheers!
Jon
-- Jon Puritz, PhD Postdoctoral Research Associate Northeastern University Marine Science Center 430 Nahant Rd, Nahant, MA 01908
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On December 1, 2016 at 6:45:22 AM, Tomasz Suchan (notifications@github.com) wrote:
I updated main dDocent pipeline to test for vcftools version on start and assign the proper flag to the variable (either --geno or --max-missing). From my testing, this change occurred in vcftools 0.1.12.
You can view, comment on, or merge this pull request online at:
https://github.com/jpuritz/dDocent/pull/29 Commit Summary
File Changes
Patch Links:
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Hi Jon, sorry, somehow I added pull request for some old typo in Reference Assembly Tutorial.md I corrected a while ago!
I updated main
dDocent
pipeline to test forvcftools
version on start and assign the proper flag to the variable (either--geno
or--max-missing
). From my testing, this change occurred in vcftools 0.1.12.In
filter_missing_ind.sh
andpop_missing_filter.sh
I did similar thing with--missing
->--missing-ind
change that occurred in vcftools 0.1.13.