jpuritz
commented
7 years ago Thanks so much for this. I think your pull request only had one patch, but I pulled on your master dDocent branch to get all the changes.
Cheers!
Jon
-- Jon Puritz, PhD Postdoctoral Research Associate Northeastern University Marine Science Center 430 Nahant Rd, Nahant, MA 01908
Webpage: MarineEvoEco.com
Email: jpuritz@gmail.com
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"The most valuable of all talents is that of never using two words when one will do." -Thomas Jefferson
On December 1, 2016 at 6:45:22 AM, Tomasz Suchan (notifications@github.com) wrote:
I updated main dDocent pipeline to test for vcftools version on start and assign the proper flag to the variable (either --geno or --max-missing). From my testing, this change occurred in vcftools 0.1.12.
In filter_missing_ind.sh and pop_missing_filter.sh I did similar thing with --missing -> --missing-ind change that occurred in vcftools 0.1.13.
You can view, comment on, or merge this pull request online at:
https://github.com/jpuritz/dDocent/pull/29 Commit Summary
- Corrected end of code box, l.39
File Changes
- M tutorials/Reference Assembly Tutorial.md https://github.com/jpuritz/dDocent/pull/29/files#diff-0 (3)
Patch Links:
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TomaszSuchan
I updated main
dDocentpipeline to test forvcftoolsversion on start and assign the proper flag to the variable (either--genoor--max-missing). From my testing, this change occurred in vcftools 0.1.12.In
filter_missing_ind.shandpop_missing_filter.shI did similar thing with--missing->--missing-indchange that occurred in vcftools 0.1.13.