When answering no to the incorrect count of individuals in a directory, dDocent returns an error indicating the incorrect naming convention for the individuals:
Please double check that all fastq files are named Ind01.F.fq.gz and Ind01.R.fq.gz
instead of how it appears correctly in different error prompts:
Please rename individuals to: Locality_Individual.F.fq.gz
https://github.com/jpuritz/dDocent/blob/eed5a7d3b16ee7654d21916668d4fe44318f312f/dDocent#L789
When answering
no
to the incorrect count of individuals in a directory, dDocent returns an error indicating the incorrect naming convention for the individuals:Please double check that all fastq files are named Ind01.F.fq.gz and Ind01.R.fq.gz
instead of how it appears correctly in different error prompts:Please rename individuals to: Locality_Individual.F.fq.gz