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jpuritz / dDocent

a bash pipeline for RAD sequencing
ddocent.com
MIT License
52 stars 41 forks source link

Patch 1 #40

Closed pdimens closed 5 years ago

pdimens commented 5 years ago

Gives me an odd error:

dDocent 2.7.0 

Contact jpuritz@uri.edu with any problems 

Checking for required software

All required software is installed!
/home/pdimens/dDocent_fp: line 890: syntax error near unexpected token `('
/home/pdimens/dDocent_fp: line 890: `       paste sort.contig.cluster.ids <(mawk '!/>/' uniq.F.fasta) > contig.cluster.Funiq'
jpuritz commented 5 years ago

Adjusting fastp parameters to match TRIMMOMATIC