The code has been indent-ified for legibility, and the early parts of separate folder parsing are done (at least the trimming, so far), but for the life if me I can't figure out lines 142-147. The script will see individuals in the untrimmed folder just fine and process them accordingly, but it cannot properly see individuals in the same directory as it's being run, which makes no sense.
I've been trying all sorts of things for 2hrs, including variants to ls and find and while the individual code snippets will identify the appropriate NumInds, it wont work in the dDocent code when displaying " dDocent identified __ individuals, is that correct". If you have time, can you take a look? I've been testing this on 2 small crappy samples for speed.
The code has been indent-ified for legibility, and the early parts of separate folder parsing are done (at least the trimming, so far), but for the life if me I can't figure out lines 142-147. The script will see individuals in the
untrimmedfolder just fine and process them accordingly, but it cannot properly see individuals in the same directory as it's being run, which makes no sense.I've been trying all sorts of things for 2hrs, including variants to
lsandfindand while the individual code snippets will identify the appropriateNumInds, it wont work in the dDocent code when displaying " dDocent identified __ individuals, is that correct". If you have time, can you take a look? I've been testing this on 2 small crappy samples for speed.