jpuritz / dDocent

a bash pipeline for RAD sequencing
ddocent.com
MIT License
52 stars 41 forks source link

install_dDocent.FB_requirements #5

Closed rwtaylor closed 9 years ago

rwtaylor commented 9 years ago

When installing locally, cutadapt installation fails with this error: error: could not create '/usr/lib64/python2.6/site-packages/cutadapt': Permission denied

running python setup.py install --user works, but then you have to append ~/.local/bin to the PATH

Also, FreeBays v0.9.21-19-gc003c1e is install which leads to this error/warning.

-bash-4.1$ dDocent.FB
dDocent 1.2

Contact jpuritz@gmail.com with any problems

Checking for required software
The version of FreeBayes installed in your $PATH is not optimized for dDocent.
Please install a version 0.9.20
jpuritz commented 9 years ago

Thanks for finding this bug!