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jpuritz / dDocent

a bash pipeline for RAD sequencing
ddocent.com
MIT License
53 stars 41 forks source link

sh: /dev/tty: No such device or address #86

Closed Anto007 closed 2 months ago

Anto007 commented 1 year ago

I consistently get the below error message when I run dDocent 2.8.13 (conda installation) on the SLURM-based computation cluster (CentOS Linux release 7.9.2009) at my end. The correct final output files seem to be created though. I was wondering if there were any quick-fix solutions here? Thank you very much. 

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sh: /dev/tty: No such device or address
jpuritz commented 2 months ago

The error message "sh: /dev/tty: No such device or address" typically occurs when a shell script or command tries to access the terminal device /dev/tty, but it's unable to find it.

This could happen if the script is trying to read input from the terminal (stdin) but is unable to do so because the terminal device is not available or accessible.

Possible reasons for this error could include:

  1. Running a script or command in a non-interactive environment where the terminal device is not available.
  2. Permissions issue preventing access to the terminal device.
  3. The terminal device being unavailable or misconfigured.

If you're running dDocent via SLURM, you need to make sure you are giving it a configuration file and not running interactively.