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jr-leary7
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SCISSORS
SCISSORS builds upon the Louvain graph-based clustering in Seurat by optimizing parameter selection when reclustering cell groups, with an eye towards identifying rare cell types.
MIT License
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long vectors (argument 1) are not supported in .C after integration
#33
AJTDaedalus
opened
6 months ago
3
Error: No cells found in ReclusterCells
#32
gianfilippo
opened
6 months ago
0
Replace BioRxiv link with journal publication link
#31
molecules
opened
10 months ago
1
add `verbose = TRUE` flag to all functions instead of printing unconditionally
#30
jr-leary7
opened
1 year ago
1
fix identification of which dimension reductions to re-embed in `ReclusterCells()`
#29
jr-leary7
opened
1 year ago
0
Improve parallelism performance
#28
jr-leary7
opened
1 year ago
0
Add % ribosomal protein genes computation to `PrepareData()`
#27
jr-leary7
opened
1 year ago
0
add GitHub action to run code coverage with `codecov`
#26
jr-leary7
opened
1 year ago
0
Add GitHub action to run R CMD CHECK on push to main
#25
jr-leary7
opened
1 year ago
0
Add README badges
#24
jr-leary7
opened
1 year ago
0
added dynamically-generated README -- closes #19
#23
jr-leary7
closed
1 year ago
0
Add package citation
#22
jr-leary7
closed
1 year ago
0
Improve handling of integrated datasets
#21
jr-leary7
opened
1 year ago
0
Improve speed / memory usage in `CosineDist()`
#20
jr-leary7
opened
1 year ago
0
Add dynamically-generated README.Rmd
#19
jr-leary7
closed
1 year ago
0
Add `R CMD CHECK` & code coverage badges to README
#18
jr-leary7
opened
1 year ago
0
Add unit tests
#17
jr-leary7
opened
1 year ago
0
Reduce complexity of `ReclusterCells()`
#16
jr-leary7
opened
1 year ago
0
README & docs update -- closes #13
#15
jr-leary7
closed
1 year ago
0
Another big docs update
#14
jr-leary7
closed
1 year ago
0
Add images of output to README.md
#13
jr-leary7
closed
1 year ago
0
Big documentation update
#12
jr-leary7
closed
1 year ago
0
Fixed / streamlined IntegrateSubclusters()
#11
jr-leary7
closed
1 year ago
0
OK FINALLY actually fixed it i swear
#10
jr-leary7
closed
1 year ago
0
ACTUALLY fixed auto mode for cluster selection
#9
jr-leary7
closed
1 year ago
0
i hate named vectors
#8
jr-leary7
closed
1 year ago
0
Changed score cutoff for auto cluster selection
#7
jr-leary7
closed
1 year ago
0
Bug update - parallelism, bug fixes - closes #5
#6
jr-leary7
closed
1 year ago
0
Convert main `ReclusterCells()` loop to parallel
#5
jr-leary7
closed
1 year ago
0
Add support for multiple assays to `ChoosePCs()`
#4
jr-leary7
closed
2 years ago
0
Add support for generalized reclustering for arbitrary Idents
#3
jr-leary7
opened
2 years ago
0
Add support for `Seurat` integration workflow
#2
jr-leary7
closed
2 years ago
0
Add support for log-normalization workflow in `Seurat` object
#1
jr-leary7
closed
2 years ago
0