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jr-leary7
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scLANE
Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.
MIT License
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Add function to correlate expression with gene program scores
#166
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jr-leary7
closed
9 months ago
jr-leary7
commented
10 months ago
main goal is to find genes that are "important" to each identified gene cluster / program
do this by computing Spearman correlation of gene expression with per-cell module scores from
geneProgramScoring()
& getting associated
p
-values
this is kind of inspired by what
CellRank
does to identify lineage drivers (
source
)
this is a future enhancement & won't be worked on until after the preprint is submitted (I promise!)
geneProgramScoring()
& getting associated p-valuesCellRank
does to identify lineage drivers (source)