I am getting following error after querying datasets
Plant ensembl datasets
Traceback (most recent call last):
File "ensembl.py", line 24, in
dataset.query(attributes=['ensembl_gene_id', 'external_gene_name', 'gene_biotype'], filters={'biotype': ['rRNA','rRNA_pseudogene']})
File "/opt/data/home/nikhil/anaconda3/envs/lncEVO/lib/python3.6/site-packages/pybiomart/dataset.py", line 266, in query
raise BiomartException(response.text)
pybiomart.base.BiomartException: Query ERROR: caught BioMart::Exception::Usage: WITHIN Virtual Schema : default, Dataset sbicolor_eg_gene NOT FOUND
here I am attaching my script please look... I am waiting for your reply...
Thank You
ensembl .py.txt
hi Julian
I am getting following error after querying datasets Plant ensembl datasets Traceback (most recent call last): File "ensembl.py", line 24, in
dataset.query(attributes=['ensembl_gene_id', 'external_gene_name', 'gene_biotype'], filters={'biotype': ['rRNA','rRNA_pseudogene']})
File "/opt/data/home/nikhil/anaconda3/envs/lncEVO/lib/python3.6/site-packages/pybiomart/dataset.py", line 266, in query
raise BiomartException(response.text)
pybiomart.base.BiomartException: Query ERROR: caught BioMart::Exception::Usage: WITHIN Virtual Schema : default, Dataset sbicolor_eg_gene NOT FOUND
here I am attaching my script please look... I am waiting for your reply... Thank You ensembl .py.txt