search

jrkerns / pylinac

An image analysis library for medical physics
https://pylinac.readthedocs.io/en/latest/
MIT License
157 stars 99 forks source link

CatPhan Regression - Runtime Warning #298

Open crcrewso opened 4 years ago

crcrewso commented 4 years ago

Error Message

/home/crcrewso/venv/pylinactest/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3334: RuntimeWarning: Mean of empty slice.
  return _methods._mean(a, axis=axis, dtype=dtype,
/home/crcrewso/venv/pylinactest/lib64/python3.8/site-packages/numpy/core/_methods.py:161: RuntimeWarning: invalid value encountered in double_scalars
  ret = ret.dtype.type(ret / rcount)
/home/crcrewso/venv/pylinactest/lib64/python3.8/site-packages/numpy/core/_methods.py:216: RuntimeWarning: Degrees of freedom <= 0 for slice
  ret = _var(a, axis=axis, dtype=dtype, out=out, ddof=ddof,
/home/crcrewso/venv/pylinactest/lib64/python3.8/site-packages/numpy/core/_methods.py:185: RuntimeWarning: invalid value encountered in true_divide
  arrmean = um.true_divide(
/home/crcrewso/venv/pylinactest/lib64/python3.8/site-packages/numpy/core/_methods.py:209: RuntimeWarning: invalid value encountered in double_scalars
  ret = ret.dtype.type(ret / rcount)

Describe the Bug Warning from numpy about mean of empty slice

To Reproduce Steps to reproduce the behavior:

  1. Install master version of pylinac with currently listed dependancies
  2. run CT analysis on Dataset
  3. See error
  4. Analysis continues with what appears to be accurate results

Expected behavior No warning message

jrkerns commented 4 years ago

You can filter them (e.g. https://stackoverflow.com/questions/29347987/why-cant-i-suppress-numpy-warnings) or upgrade numpy.

jrkerns commented 3 years ago

See if Randy's fix removes these for you: https://github.com/jrkerns/pylinac/pull/355.