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js229 / Vennerable

Vennerable provides Venn diagrams in R. It displays Venn and Euler diagrams for up to 9 different sets and using a variety of geometries. It allows the display of area-weighted Venn diagrams and allows fine graphical control over the result.
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Windows Installation failure #41

Closed rwbaer closed 3 years ago

rwbaer commented 7 years ago

Installation attempt on Windows 10 fails:

The problem seems either due to the fact that R is on a drive drive E:\ or more likely that it is located in a directory containing a space in its name: E:\Program Files\R\R-3.3.2 The problem is either way, I don't know how to work around it.

> install_github("js229/Vennerable");
Downloading GitHub repo js229/Vennerable@master
from URL https://api.github.com/repos/js229/Vennerable/zipball/master
Installing Vennerable
"E:/Program Files/R/R-3.3.2/bin/x64/R" --no-site-file --no-environ --no-save  \
  --no-restore --quiet CMD INSTALL "C:/Users/Rob  \
  Baer/AppData/Local/Temp/RtmpmOnZXW/devtools828ded11e9/js229-Vennerable-46057c9"  \
  --library="C:/Users/Rob Baer/R/win-library/3.3" --install-tests 

'E:\Program' is not recognized as an internal or external command,
operable program or batch file.
Error: Command failed (1)
Called from: fun(r, args = args, env_vars = env_vars, path = path, ...)
js229 commented 7 years ago

I very much doubt this is a problem with Vennerable.

A fresh install of R 3.3.2 , running in Rstudio 1.0.44, and the six (sorry) separate commands listed at https://github.com/js229/Vennerable/blob/master/README.md works fine for me (though a couple of extra packages, plyr and stringr need downloading too):


> install_github("js229/Vennerable",force=TRUE);
Downloading GitHub repo js229/Vennerable@master
from URL https://api.github.com/repos/js229/Vennerable/zipball/master
Installing Vennerable
"C:/PROGRA~1/R/R-33~1.2/bin/x64/R" --no-site-file --no-environ --no-save --no-restore --quiet CMD INSTALL  \
  "C:/Users/Jonathan/AppData/Local/Temp/RtmpoNzFuU/devtools156c33015d1e/js229-Vennerable-46057c9"  \
  --library="C:/Users/Jonathan/Documents/R/win-library/3.3" --install-tests 

* installing *source* package 'Vennerable' ...
rwbaer commented 7 years ago

Well, I just got around to trying again, with devtools, and I guess the issue is that something in the tool chain can't handle paths with spaces in it.

library(devtools) install_github("js229/Vennerable"); library(Vennerable) Downloading GitHub repo js229/Vennerable@master from URL https://api.github.com/repos/js229/Vennerable/zipball/master Installing Vennerable "E:/Program Files/R/R-3.3.2/bin/x64/R" --no-site-file --no-environ --no-save --no-restore --quiet CMD INSTALL "C:/Users/Rob \ Baer/AppData/Local/Temp/RtmpS8b8S4/devtools2458420a5ed3/js229-Vennerable-46057c9" --library="C:/Users/Rob Baer/R/win-library/3.3" \ --install-tests

'E:\Program' is not recognized as an internal or external command, operable program or batch file. Error: Command failed (1)

The problem is likely the space in my user name and thus my home directory. Don't know the workaround.

js229 commented 7 years ago

Well, looks like a difference in install_github between your system and mine then. I suggest you see if you can use install_github on a different R package (don't know of one, sorry) and consult the install_github maintainer with the results.

rwbaer commented 3 years ago

I have left this alone for too long, but with the current bioconductor and devtools all works as expected. Closing.