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js51 / Circular-genome-tools

Circular genome tools is a sage package for working with circular genomes represented by signed or unsigned permutations.
https://cgt.joshuastevenson.me
GNU General Public License v3.0
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Make it easier to compute MLEs for multiple genomes #35

Closed js51 closed 1 year ago

js51 commented 3 years ago

the irreps, eigenvalues, projections etc are currently recomputed every time. Caching won't work because they aren't hashable but we should be able to store them in memory some other way, or allow the user to pass them around.