Improve genome visualisation module

js51 / Circular-genome-tools

Circular genome tools is a sage package for working with circular genomes represented by signed or unsigned permutations.

https://cgt.joshuastevenson.me

GNU General Public License v3.0

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Open js51 opened 3 years ago

js51 commented 3 years ago

This was thrown together quite quickly and could do with some improvements:

[ ] More options for representing genomes (currently they need to be converted to a position paradigm (reg->pos) list
[ ] Option to save image files with transparency
[ ] Option to move arrows to the ends of each region
[ ] Option to have a gap instead of a line separating regions
[ ] TikZ output (probably a complete rewrite)
[ ] Option to change output size
[ ] Label sizing options
[ ] #31

js51 commented 3 years ago

I also hear that networkx has some interactive visualisations. Could be fun!