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jsevo
/
taxumap
MIT License
15
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5
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Add hashbang, fix CLI example in readme, add `script` for installing
#23
nickp60
closed
2 years ago
1
Examples not working
#22
jsevo
closed
2 years ago
1
explain that taxumap does not need to always have two levels
#21
cd3050
opened
2 years ago
0
TODO: optimize distance calculations at different tax levels
#20
jsevo
opened
2 years ago
1
Updates to TaxUMAP focused on usability, examples, removing unneeded code
#19
granthussey
closed
2 years ago
0
notebooks directory unneeded
#18
granthussey
closed
2 years ago
2
Fill taxonomy table function not working
#17
granthussey
closed
2 years ago
2
Remove logging
#16
granthussey
closed
2 years ago
2
Differences between inputting filenames and dataframes
#15
funnell
opened
2 years ago
3
table requirements: which column needs to be called ASV? should it be ASV/OTU or something generic?
#14
jsevo
closed
2 years ago
3
Taxumap.scatter() throws an error
#13
jsevo
closed
2 years ago
4
mismatch between api and documentation
#12
jsevo
closed
2 years ago
1
Results in current directory
#11
anadj-micro
closed
2 years ago
4
Requirement for the microbiome table to be named microbiota_table.csv
#10
anadj-micro
closed
3 years ago
1
Installation doesn't work with pip3
#9
anadj-micro
closed
2 years ago
1
Explanation for flags in README
#8
anadj-micro
closed
2 years ago
1
command line warning from umap (precomputed distance matrix) should be suppressed
#7
jsevo
closed
2 years ago
0
excessive error messaging when parsing incorrect inputs
#6
jsevo
closed
2 years ago
6
are taxonomy tables filled correctly
#5
jsevo
opened
3 years ago
0
Parsing of various taxonomic formats
#4
jsevo
closed
2 years ago
1
Restructuring of project, fixing some issues with index
#3
granthussey
closed
3 years ago
2
Newest batch of updates
#2
granthussey
closed
4 years ago
0
First batch of updates to Taxumap
#1
granthussey
closed
4 years ago
1