Hello,
Is there a way that I can use multiple cores to run the findDMRs.r? The DSS uses BPPARAM to run on multiple cores, but it's not included in the DMRfinder. My WGBS data is very large and it took very long time to run the DMR calling. I have to manually edit the script to run it. Hope that an argv for setting cpu cores can be added in the future.
mParam = MulticoreParam(workers=8, progressbar=TRUE)dml <- DMLtest(bsdata, group1=samples[[ i ]], group2=samples[[ j ]], BPPARAM=mParam)
Regards
Ziliang
Hello, Is there a way that I can use multiple cores to run the findDMRs.r? The DSS uses BPPARAM to run on multiple cores, but it's not included in the DMRfinder. My WGBS data is very large and it took very long time to run the DMR calling. I have to manually edit the script to run it. Hope that an argv for setting cpu cores can be added in the future.
mParam = MulticoreParam(workers=8, progressbar=TRUE)dml <- DMLtest(bsdata, group1=samples[[ i ]], group2=samples[[ j ]], BPPARAM=mParam)Regards Ziliang