Closed bishwaG closed 5 years ago
Thanks for the question. The sample groups to be tested for differential methylation are specified in the call to findDMRs.r
. For more details please consult the User Guide or the just-updated README, in particular the Quick start and Testing regions sections.
John Gaspar
Thank you @jsh58
Is it possible to adjust covariates in DMRfinder?
I do not think so, but you can check the DSS documentation to see what is possible there.
Hi @jsh58 It looks like it is possible to adjust covariates in DSS.
Hi,
I have RRBS data with twin pair study design. How can I provide pair information to DMRfinder to perform pairwise differential methylation analysis?