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jsh58 / DMRfinder

Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
MIT License
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Error in `[<-.data.frame`(`*tmp*`, , !col %in% dss & !substr(col, 1, nchar(col) - : replacement has 0 items, need 10 Calls: [<- -> [<-.data.frame Execution halted #8

Closed khl0798 closed 5 years ago

khl0798 commented 5 years ago

I used DMRfinder to correct DMRs in high sequence methylation data. I used the test.csv file as example:

_20181023162242

The error was:

_20181023162340

I ran command on ubuntu server,

_20181023162416

Now I don't know how to solve the error.

jsh58 commented 5 years ago

@khl0798

I cannot reproduce that error on my computer, which has R v3.5.0 and DSS v2.28.0 installed. I recommend that you check that your test.csv file does not have any extra blank lines or tabs, and that your version of DSS is up to date.

khl0798 commented 5 years ago

@khl0798

I cannot reproduce that error on my computer, which has R v3.5.0 and DSS v2.28.0 installed. I recommend that you check that your test.csv file does not have any extra blank lines or tabs, and that your version of DSS is up to date.

Many thanks. I changed version of R v3.2.3 to R v3.4.4 and reinstalled DSS. There is no more error. @jsh58