`genrich -y` on single-end chip without replicates emits q-value of -1 across the board

jsh58 / Genrich

Detecting sites of genomic enrichment

MIT License

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Closed malcook closed 4 years ago

malcook commented 4 years ago

By my reading of q-value calculation, a q-value should still be computed in such cases.

jsh58 commented 4 years ago

A little further down in the README, it is stated:

If a -q threshold is not specified, q-values are not calculated (reported as -1).