Question regarding ATAC-Seq replicates with varying readlengths

jsh58 / Genrich

Detecting sites of genomic enrichment

MIT License

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Question regarding ATAC-Seq replicates with varying readlengths #43

Closed malcook closed 4 years ago

malcook commented 4 years ago

Should I expect any problems using ATAC-Seq with using biological replicates that were both paired end sequenced but using varying read lengths of 150 & 75bp? If so, are there any suggested workarounds?

jsh58 commented 4 years ago

No, you shouldn't expect any problems with variable read lengths. Please let me know if a problem arises.