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jsh58 / Genrich

Detecting sites of genomic enrichment
MIT License
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Convert BedGraph-ish files to BedGraph files #61

Closed matwgmkw closed 3 years ago

matwgmkw commented 3 years ago

Hi. Thanks for this nice software.

I am wondering after obtaining the BedGraph-ish files of the ATAC-seq signal pileups, how to convert them to BedGraph files (which column to extract)? I have to extract the first four columns to a new file, is that right?

There are 6 columns in the file: chr, start, end, experimental, control and -log(p)

Thanks.

jsh58 commented 3 years ago

Thanks for the question. The descriptions of the columns of such files is given in this section. The question of which column to extract depends entirely on what information you are trying to collect and examine.