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jsh58 / Genrich

Detecting sites of genomic enrichment
MIT License
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Narrow and Broad Peaks #65

Closed Carmelo-Bravo closed 3 years ago

Carmelo-Bravo commented 3 years ago

Hi, I want to use Generich to analyze my single end CHIPseq data. I have different type of CHIPseq experient (TFs and Histon Markers like H3K9me3 or H3K4me3). I was wondering if I can call the different types of peaks (narrow and broad) using Generich and, if not, how I can discriminate narrow peaks from broad peaks using Generich.

Thanks!

jsh58 commented 3 years ago

Thanks for the question. I recommend that you examine the peak-calling parameters of Genrich and the information contained in the output file (described in the -o <file> section here. There is also some discussion of this topic in #58.

Carmelo-Bravo commented 3 years ago

Thanks for the information and for your help.