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jsh58 / Genrich

Detecting sites of genomic enrichment
MIT License
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Error! Cannot parse BAM file #86

Closed birkiy closed 2 years ago

birkiy commented 2 years ago

Genrich could not parse the BAM file. Instead, I gave SAM with header, it could.

samtools view -h {BAM} | Genrich -t - -o {output}

jsh58 commented 2 years ago

OK, glad it worked!