jstansfield0 / multiHiCcompare

Other
2 stars 1 forks source link

Issue about make_hicexp #3

Closed lazurite closed 4 years ago

lazurite commented 4 years ago

Is the package suitable for drosophila melanogaster (dm3)? I tried to use the function make_hicexp and failed on the columns of chromosome (2L,2R here) , the name of chromosome will became “NA”.

jstansfield0 commented 4 years ago

It should work. Make sure your data is formatted correctly according to the vignettes and help file. Chromosome names should be numeric when you are entering them.

From: lazurite notifications@github.com Sent: Tuesday, January 21, 2020 6:12 AM To: jstansfield0/multiHiCcompare multiHiCcompare@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: [BULK] [jstansfield0/multiHiCcompare] Issue about make_hicexp (#3)

Is the package suitable for drosophila melanogaster (dm3)? I tried to use the function make_hicexp and failed on the columns of chromosome (2L,2R here) , the name of chromosome will became “NA”.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHubhttps://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_jstansfield0_multiHiCcompare_issues_3-3Femail-5Fsource-3Dnotifications-26email-5Ftoken-3DAEZEJ4BQVSKUQQRB26Y52ODQ63J6FA5CNFSM4KJRULTKYY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4IHTGH7Q&d=DwMFaQ&c=UE1eNsedaKncO0Yl_u8bfw&r=jthtN8WbWJ1hajCA8WyK_ZgMcxIA8APOuH6vXZC-CIg&m=0UH1Xizj9EJefaJoWAfiGnrPLiaVidhaO0hjZG47PRM&s=uwMuQ03Aoj8pGJ0D5zyZM1BQZ5QMAqK5isBaU-j38dc&e=, or unsubscribehttps://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_notifications_unsubscribe-2Dauth_AEZEJ4HOWTQEVOFASPR6YD3Q63J6FANCNFSM4KJRULTA&d=DwMFaQ&c=UE1eNsedaKncO0Yl_u8bfw&r=jthtN8WbWJ1hajCA8WyK_ZgMcxIA8APOuH6vXZC-CIg&m=0UH1Xizj9EJefaJoWAfiGnrPLiaVidhaO0hjZG47PRM&s=TXLbS2i9TN8J_qa1PqLTTM1HvAuefGUCqAif9D2HfQc&e=.