jstjohn / SeqPrep

Tool for stripping adaptors and/or merging paired reads with overlap into single reads.
MIT License
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The q value parameter description is a bit weird #23

Open aaronmck opened 9 years ago

aaronmck commented 9 years ago

Nothing too serious, but the wording for the -q parameter is a bit strange, given what the code does.

-q Quality score cutoff for mismatches to be counted in overlap; default = 13

should read something like:

-q Quality score minimum for bases to be considered mismatches in the overlap; default = 13