Open conchoecia opened 8 years ago
After giving up with editing the Makefile, the SeqPrep.c file, and the utils.h file, I pulled the latest version of the repo (commit 488ef06
).
I didn't edit anything, ran make
, and here is the resulting output.
make
cc -c -Wall -O0 -g SeqPrep.c -o SeqPrep.o
SeqPrep.c: In function ‘main’:
SeqPrep.c:137:8: warning: variable ‘print_overhang’ set but not used [-Wunused-but-set-variable]
bool print_overhang = false;
^
cc -c -Wall -O0 -g utils.c -o utils.o
cc -c -Wall -O0 -g stdaln.c -o stdaln.o
stdaln.c: In function ‘aln_local_core’:
stdaln.c:548:25: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
int gap_open, gap_ext, b;
^
stdaln.c: In function ‘aln_extend_core’:
stdaln.c:868:16: warning: variable ‘tmp_len’ set but not used [-Wunused-but-set-variable]
int q, r, qr, tmp_len;
^
cc SeqPrep.o utils.o stdaln.o -lz -lm -o SeqPrep
Cool! So it's working now?
I'm getting weird compiler errors where functions are "declared but never defined"!
System info
I deleted your spinner progress bar function and the lines that called it, since it seemed like it was generating errors for other people.
Any ideas? I'm at UCSC too!