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jtamames / SqueezeMeta

A complete pipeline for metagenomic analysis
GNU General Public License v3.0
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Stopping in STEP4 -> 04.rundiamond.pl. Program finished abnormally #543

Closed irenealdea95 closed 1 year ago

irenealdea95 commented 2 years ago

Hello, when running SqueezeMeta with longread files (Oxford Nanopore) I get this error when it gets STEP4 The command I used was:

> SqueezeMeta.pl -s reads -f raw/ -m sequential -map minimap2-ont

I don't think is a RAM issue, since I'm using the sequential mode Could anyone please tell me the problem?

Thank so much in advance, best,

Irene

fpusan commented 2 years ago

What version of SqueezeMeta are you using? Can you share the syslog file isnide the project directory with us?

irenealdea95 commented 2 years ago

Hi, I'm using the 1.5.1 (Jan 2022)

Of course, find attached the file! syslog.txt

fpusan commented 2 years ago

Ah, ok, that issue got fixed in 1.5.2 so you can just update to the latest version and it should work

irenealdea95 commented 2 years ago

Ah ok thanks,

how should I upgade it, please?

fpusan commented 2 years ago

Re-create the conda environment with the new version and run configure_nodb.pl to link the new installation to the database you already downloaded. You can find more details in the ReadMe.

fpusan commented 1 year ago

Closing due to lack of activity, feel free to reopen.