Restart resumes from step 3 even if step 2 failed

jtamames / SqueezeMeta

A complete pipeline for metagenomic analysis

GNU General Public License v3.0

365 stars 78 forks source link

Restart resumes from step 3 even if step 2 failed #591

Closed fpusan closed 1 year ago

fpusan commented 1 year ago

RNA file /data/fer/SQMtestData/Hadza/Hadza2merged/intermediate/02.Hadza2merged.maskedrna.fasta already found, skipping step 2 Maybe an empty file is created in the previous step even if barrnap failed?

jtamames commented 1 year ago

Likely. Will dig into that. Thanks for reporting lol!