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jtamames / SqueezeMeta

A complete pipeline for metagenomic analysis
GNU General Public License v3.0
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what is the meaning of percentage in case of subsetting. #608

Closed jahid10 closed 1 year ago

jahid10 commented 1 year ago

Hi, I have subset some specific function using subsetFunction, after combining I plotted the taxonomy. One thing I'm not clear is that what does the percentage in this case means? I have read your paper (figure-4), it says percentage of total reads? But specifically, does it mean percentage of total reads that can be assigned both to those functions and these taxas? pectin_tax_with_un

fpusan commented 1 year ago

The total percentage (height)of each bar is the percent of the total reads assigned to the specific function. The color division on each bar represent how all the reads from your function were assigned to the different taxa.

jahid10 commented 1 year ago

Thank you very much