jtamames / SqueezeMeta

A complete pipeline for metagenomic analysis
GNU General Public License v3.0
383 stars 81 forks source link

option parser issue #609

Open moritzbuck opened 1 year ago

moritzbuck commented 1 year ago

SqueezeMeta does not return an error when an non-existant option is used (e.g. --extraassembly instead of --extassembly), which can make debugging a pain. Probably just perl parser being simple, but should be easily fixable though...

(put here on request of Fernando, just saying)

jtamames commented 1 year ago

Hello! Indeed it is a good idea to include a checking for that. Will do in upcoming versions. Thanks!